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testthat 3e#1165

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jgabry merged 37 commits intomasterfrom
testthat-3e
Apr 2, 2026
Merged

testthat 3e#1165
jgabry merged 37 commits intomasterfrom
testthat-3e

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@VisruthSK
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@VisruthSK VisruthSK commented Mar 24, 2026

Migrated to latest testthat edition.

Closes #1155.

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jgabry commented Mar 24, 2026

Thanks for working on this!

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codecov-commenter commented Mar 24, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 91.14%. Comparing base (5809552) to head (e010022).
⚠️ Report is 25 commits behind head on master.

Additional details and impacted files
@@            Coverage Diff             @@
##           master    #1165      +/-   ##
==========================================
+ Coverage   90.85%   91.14%   +0.29%     
==========================================
  Files          14       15       +1     
  Lines        5924     6065     +141     
==========================================
+ Hits         5382     5528     +146     
+ Misses        542      537       -5     

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@VisruthSK
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@jgabry do you know why macos devel would be failing in the R dep setup? Doesn't seem to happen in main--could this be a cache/GHA error? https://github.com/stan-dev/cmdstanr/actions/runs/23573417706/job/68640740296

@VisruthSK VisruthSK requested a review from jgabry March 26, 2026 22:16
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jgabry commented Mar 26, 2026

Looks like something is broken in R Core or pak which is causing macos devel to fail.

Took a quick glance at the logs, I agree this seems likely. I’ll try to take a look at the actual PR tomorrow.

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VisruthSK commented Mar 26, 2026

Thanks! Looks like this (new) function in tools is broken, planning on submit a patch.

Got fixed, so should be gtg soon

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Mostly looks great, just a few comments/questions.

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jgabry commented Mar 30, 2026

Got fixed, so should be gtg soon

Still seems broken (hitting the same error in other repos too)

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I see builds failing, but I think the specific error that I ran into should be fixed. I think the C API changed so some packages aren't building (abind in posterior, lazyeval in bayesplot). I don't think there are any other deps which are problematic on devel for cmdstanr, so hopefully this run will go through

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jgabry commented Mar 30, 2026

I see builds failing, but I think the specific error that I ran into should be fixed. I think the C API changed so some packages aren't building (abind in posterior, lazyeval in bayesplot). I don't think there are any other deps which are problematic on devel for cmdstanr, so hopefully this run will go through

It's still failing in other recent cmdstanr PRs. This one is from today:

https://github.com/stan-dev/cmdstanr/actions/runs/23760099930/job/69225022781?pr=1166

Not a big deal, we can just wait for it to sort itself out I guess?

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Missed that. Not sure why its still failing since the code is fixed in source--maybe the R install is cached? Waiting it out seems good to me.

@VisruthSK VisruthSK marked this pull request as draft March 31, 2026 19:30
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There are still some snapshots since expect_known_output() was deprecated and the suggestion is to use a snapshot.

@VisruthSK VisruthSK marked this pull request as ready for review April 1, 2026 01:03
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I swapped a number of things to use withr functions instead of base R so that tests don't have to manually clean up after themselves with a bunch of on.exit() calls. withr is already a suggested import so I see no reason not to swap.

@VisruthSK VisruthSK requested a review from jgabry April 1, 2026 14:52
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Looking good. Just a couple of comments/questions/suggestions. Might have more, but maybe not.

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Two more small cleanups I noticed. Otherwise I think we're in good shape.

Comment on lines +3 to +8
mtime_check_enabled <- FALSE
if(length(mod$exe_file()) > 0 && file.exists(mod$exe_file())) {
original_mtime <- file.mtime(mod$exe_file())
suppressWarnings(Sys.setFileTime(mod$exe_file(), original_mtime - 10))
before_mtime <- file.mtime(mod$exe_file())
mtime_check_enabled <- before_mtime < original_mtime
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A couple more mtime_check_enabled to cleanup

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Seems ready to me if everything passes. @VisruthSK anything else you wanted to change?

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Nope will start the snapshot PR after this is merged

@jgabry jgabry merged commit c0e7c35 into master Apr 2, 2026
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@jgabry jgabry deleted the testthat-3e branch April 2, 2026 21:00
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