Draft
Conversation
|
jasmezz
approved these changes
Mar 30, 2026
Comment on lines
+30
to
+31
| amp_skip_amplify = true | ||
| // takes too long |
Collaborator
There was a problem hiding this comment.
Suggested change
| amp_skip_amplify = true | |
| // takes too long | |
| amp_skip_amplify = true // takes too long |
Unless there is a recommendation to have comment in separate line?
Comment on lines
+44
to
+45
| bgc_skip_deepbgc = true | ||
| // takes too long |
Collaborator
There was a problem hiding this comment.
Suggested change
| bgc_skip_deepbgc = true | |
| // takes too long | |
| bgc_skip_deepbgc = true // takes too long |
Member
Author
|
Failed first attempt on default, trying increased memory |
Member
Author
|
@HaidYi @Xinpeng021001 when running our full test on our wastewater test data (which might not be super optimal), I got the following error: Is this a valid output or does it suggest something went wrong? Should we make the PDf outputs optional in the module? |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).