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Pull requests: loculus-project/loculus

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Pull requests list

chore(deps): bump rsuite from 5.83.4 to 6.1.2 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6158 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps): bump the patch group in /website with 9 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6157 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps): bump the patch group in /backend with 3 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#6156 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps-dev): bump the minorandpatch group in /integration-tests with 4 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6155 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps-dev): bump vitest from 4.0.18 to 4.1.0 in /website in the minor group dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6154 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps): bump org.jlleitschuh.gradle.ktlint from 14.1.0 to 14.2.0 in /backend in the minor group dependencies Pull requests that update a dependency file java Pull requests that update Java code
#6153 opened Mar 18, 2026 by dependabot bot Loading…
chore(deps): bump the minorandpatch group in /docs with 2 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6152 opened Mar 18, 2026 by dependabot bot Loading…
fix(deployment): default k3s image and --k3s-image argument in deploy.py deployment Code changes targetting the deployment infrastructure
#6151 opened Mar 18, 2026 by tombch Loading…
3 tasks
3
feat(website): rename AA mutations to AA substitutions on details page preview Triggers a deployment to argocd website Tasks related to the web application
#6150 opened Mar 18, 2026 by anna-parker Loading…
3 tasks done
1
Allow customization of data use terms agreement text deployment Code changes targetting the deployment infrastructure website Tasks related to the web application
#6149 opened Mar 17, 2026 by theosanderson • Draft
3 tasks done
1
feat(website): restore previous search button preview Triggers a deployment to argocd website Tasks related to the web application
#6147 opened Mar 16, 2026 by tombch • Draft
3 tasks
5
chore(silo, lapis, website): update lapis to v0.7.0, silo to v0.11.0 deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd silo/LAPIS upstream silo/LAPIS issue
#6146 opened Mar 16, 2026 by anna-parker Loading…
3 tasks done
1
9
fix(backend): use joinToString(", ") instead of joinToString { ", " } in error messages backend related to the loculus backend component
#6143 opened Mar 16, 2026 by theosanderson-agent Loading…
4 tasks done
1
3
feat(website, config): add an option for search presets deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6136 opened Mar 13, 2026 by anna-parker Loading…
3 tasks
1
5
feat: Taxonomy service
#6134 opened Mar 13, 2026 by maverbiest • Draft
3 tasks
feat(website, config): create a customDisplay for reference with variant information deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd website Tasks related to the web application
#6133 opened Mar 13, 2026 by anna-parker Loading…
3 tasks done
17
testing deployment Code changes targetting the deployment infrastructure
#6130 opened Mar 12, 2026 by anna-parker • Draft
3 tasks
feat!(ingest, workflows): add GCA downloads to mirror and enable use as segment grouping overrides in ingest deployment Code changes targetting the deployment infrastructure ingest Ingest pipeline preview Triggers a deployment to argocd
#6112 opened Mar 11, 2026 by anna-parker Loading…
2 of 3 tasks
1
18
feat(website): show sequence specific filters without requiring an associated segment website Tasks related to the web application
#6108 opened Mar 10, 2026 by anna-parker Loading…
1
7
feat(website): use segment displayName and collapse sequences container if an organism is muti-segmented deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6106 opened Mar 10, 2026 by anna-parker Loading…
2 tasks done
10
feat(prepro): refactor prepro to split up backend internal metadata from customizable metadata fields preprocessing Issues related to the preprocessing component
#6071 opened Mar 3, 2026 by anna-parker Loading…
2 of 3 tasks
8
theo-exp deployment Code changes targetting the deployment infrastructure
#6011 opened Feb 21, 2026 by theosanderson • Draft
feat(preprocessing): preserve attached files through nextclade pipeline deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component
#6008 opened Feb 19, 2026 by theosanderson-agent Loading…
2 tasks
Custom lineage functions preprocessing Issues related to the preprocessing component website Tasks related to the web application
#6004 opened Feb 19, 2026 by anna-parker • Draft
3 tasks
1
2
feat(integration-tests): add tests for uncovered UI features e2e E2E test related tests Test related issues website Tasks related to the web application
#5995 opened Feb 17, 2026 by theosanderson-agent • Draft
3 of 4 tasks
8
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