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Ex Center for Algorithmic Biotechnology

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spades spades Public

SPAdes Genome Assembler

C++ 908 159
quast quast Public

Genome assembly evaluation tool

AMPL 496 88

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Showing 10 of 30 repositories

IsoQuant Public
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

ablab/IsoQuant’s past year of commit activity

Python 203 21 56 3 Updated Feb 11, 2026
spades Public
SPAdes Genome Assembler

ablab/spades’s past year of commit activity

C++ 908 159 287 4 Updated Feb 2, 2026
rnaquast Public
Quality assessment of de novo transcriptome assemblies from RNA-Seq data

ablab/rnaquast’s past year of commit activity

Python 26 6 8 0 Updated Nov 14, 2025
nerpa Public

ablab/nerpa’s past year of commit activity

C++ 18 4 0 3 Updated Mar 20, 2025
quast-website Public
Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

ablab/quast-website’s past year of commit activity

HTML 6 2 0 0 Updated Nov 14, 2024
quast Public
Genome assembly evaluation tool

ablab/quast’s past year of commit activity

AMPL 496 88 82 4 Updated Nov 14, 2024
metarna Public

ablab/metarna’s past year of commit activity

Python 0 0 0 2 Updated Jul 6, 2023
orf-search Public
ORF search on assembly graphs

ablab/orf-search’s past year of commit activity

Python 6 3 0 0 Updated Apr 12, 2023
metaGT Public
Pipeline for metagenome and metatranscriptome joint assembly

ablab/metaGT’s past year of commit activity

Nextflow 20 MIT 3 3 0 Updated Mar 3, 2023
VerityMap Public

ablab/VerityMap’s past year of commit activity

C++ 39 GPL-3.0 5 10 1 Updated Feb 22, 2023

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Python C++ Shell Java Nextflow

Most used topics

bioinformatics transcriptome-assembly

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