fix kcluster

README.md

@@ -7,7 +7,7 @@
 
 <!-- <div style="clear: both;"></div> -->
 
-![Python](https://img.shields.io/badge/python-3.9%20%7C%203.10%20%7C%203.11%20%7C%203.12-blue)
+![Python](https://img.shields.io/badge/python-3.9%20%7C%203.10%20%7C%203.11%20%7C%203.12%20%7C%203.13-blue)
 [![PyPI](https://img.shields.io/pypi/v/ikpykit)](https://pypi.org/project/ikpykit/)
 [![codecov](https://codecov.io/gh/IsolationKernel/ikpykit/branch/main/graph/badge.svg)](https://codecov.io/gh/IsolationKernel/ikpykit)
 [![Build status](https://github.com/IsolationKernel/ikpykit/actions/workflows/ci.yml/badge.svg)](https://github.com/IsolationKernel/ikpykit/actions/workflows/ci.yml)

ikpykit/cluster/_kcluster.py

@@ -37,15 +37,15 @@ def delete_points(self, points, X):
         if isinstance(points, Integral):
             if points not in self.points_:
                 raise ValueError(f"Point {points} not in cluster {self.id}")
-            self.points_.remove(points)
             self.reduce_kernel_mean_(X)
+            self.points_.remove(points)
         elif isinstance(points, Iterable):
             missing_points = [p for p in points if p not in self.points_]
             if missing_points:
                 raise ValueError(f"Points {missing_points} not in cluster {self.id}")
+            self.reduce_kernel_mean_(X)
             for p in points:
                 self.points_.remove(p)
-            self.reduce_kernel_mean_(X)
 
     def reduce_kernel_mean_(self, X):
         if self.kernel_mean_ is None:

ikpykit/graph/tests/test_ikgod.py

@@ -125,8 +125,6 @@ def test_ikgod_h_hop_neighbors():
         ]
     )
 
-    np.random.rand(5, 2)
-
     # h=1 should see only direct neighbors
     model_h1 = IKGOD(h=1, n_estimators=10)
     model_h1._get_h_nodes_n_dict(adjacency)

mkdocs.yml

@@ -7,7 +7,7 @@ remote_branch: docs_dev
 site_description: Python library for Isolation Kernel Toolkit.
 site_author: Isolation Kernel Team
 use_directory_urls: false
-copyright: Copyright © 2024 - 2025 Xin Han
+copyright: Copyright © 2024 - 2026 Xin Han
 
 nav:
   - Home:
@@ -67,7 +67,7 @@ plugins:
   - mkdocstrings:
       handlers:
         python:
-          import:
+          inventories:
             - https://docs.python.org/3/objects.inv
             - https://mkdocstrings.github.io/autorefs/objects.inv
             - https://www.mkdocs.org/objects.inv
@@ -86,7 +86,6 @@ plugins:
             members_order: source
             docstring_options:
               ignore_init_summary: true
-              show_if_no_docstring: true
   - mkdocs-jupyter:
       ignore_h1_titles: True
       include_source: True

pyproject.toml

@@ -97,8 +97,8 @@ docs = [
     "mike==2.1.3",
     "mkdocs==1.6.1",
     "mkdocs-jupyter==0.25.0",
-    "mkdocstrings==0.26.1",
-    "mkdocstrings-python==1.11.1",
+    "mkdocstrings==0.30.1",
+    "mkdocstrings-python==1.18.2",
     "notebook==6.4.12",
 ]
 lint = ["black==24.8.0", "pre-commit>=4.3.0", "ruff>=0.14.5"]