Generalized collections UI#1077

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fhennig wants to merge 60 commits intogeneralized-collections-frontend-apifrom

generalized-collections-ui

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fhennig commented Mar 16, 2026 •

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resolves #

Summary

src/backendApi/ — moved from src/components/subscriptions/backendApi/ to sit alongside
src/lapis/ and src/covspectrum/; shared backend proxy logic extracted so collections and
subscriptions routes share a single implementation
New Zod schemas in src/types/Collection.ts for response, request, and update types, following
the same pattern as subscriptions
5 new backend service methods: getCollections, getCollection, postCollection, putCollection,
deleteCollection
New pages under /collections/[organism]/:
- Hub page listing all organisms
- Overview table (ID, name, description, variant count) with row links
- Detail view (collection metadata + per-variant cards with type badge and field display)
- Create form
- Edit form (pre-populated from fetched collection, preserves variant IDs for update)
Shared CollectionForm component used by both create and edit, with a VariantEditor supporting
both query-type (LAPIS filter expressions) and mutation-list-type variants

Screenshot

PR Checklist

All necessary documentation has been adapted.
The implemented feature is covered by an appropriate test.

vercel bot commented Mar 16, 2026 •

edited

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dashboards	Ready	Preview, Comment	Mar 18, 2026 3:43pm

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fhennig changed the base branch from main to generalized-collections-pt1

March 16, 2026 12:50

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fhennig force-pushed the generalized-collections-ui branch from 9bf63dc to 760f283 Compare

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fhennig self-assigned this

fhennig changed the base branch from generalized-collections-pt1 to generalized-collections-frontend-api

March 17, 2026 10:16

fhennig force-pushed the generalized-collections-frontend-api branch from 6ff08e9 to 8ca09af Compare

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fhennig force-pushed the generalized-collections-ui branch from db49022 to ce8db16 Compare

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fhennig and others added 13 commits

March 18, 2026 11:58


          Add tables

7038c6f


          add a 'create collection' endpoint

f1bca94


          Add 'GET' for collections; add tests

1fc3d40


          Add setup to spin up local postgres instance for testing

70b1194


          Add 'GET' for collections by ID

c205631

foo

2fb9f00


          change mutation list defintion

b9049d3


          Add delete implementation

649d910


          put pt1

1894e8b


          dedicated Variant.kt api file

0d3f253


          Change collection & variant IDs from UUID to Long

28743cd

Collections are unreleased, so we can change in-place with no migration
or backwards-compatibility concerns. Switches DB schema to bigserial,
ORM tables to LongIdTable, and all API/model/test types from String/UUID
to Long.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          review

fbc5f44


          Consolidate DB setup: use root docker-compose for local dev

f2ec21a

Remove backend/docker-compose.dev.yaml and update README to use the
root compose file's database service. Also align POSTGRES_DB name to
dashboards-backend-db across docker-compose.yml.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

fhennig and others added 5 commits

March 18, 2026 15:10


          Extract shared backend proxy, add collections proxy route

74e18ae

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Drop redundant userId args from collection service methods

73d05d6

userId is injected by the backend proxy from the session, so there
is no need to pass it from the client.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Drop userId from subscription call sites

b26b271

The userId is added by the backend proxy, so callers don't need to supply it.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          add a bit of docs

2cd8657


          Update MutationListDefinition schema to match simplified backend type

db7b941

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

fhennig force-pushed the generalized-collections-frontend-api branch from 9e5ed16 to db7b941 Compare

March 18, 2026 14:11

fhennig and others added 13 commits

March 18, 2026 15:13


          Add collection page stubs

197151f


          Add new collection form with variant editor

44d7319

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Add collections overview table

ccb46ee

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Add collection detail view

bed3ac1

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Extract shared CollectionForm, add edit form

0441f66

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Add delete button to edit form, restrict edit button to collection owner

9f6c7ab

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Fix linting and formatting issues

1289d8d

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Add Collections dropdown to nav, fix exclusive menu behavior

74fe32e

- Add Collections mega menu dropdown listing all organisms
- Use details[name] exclusive accordion to close sibling menus on open

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Use two-column layout for collection form general fields

d513a47

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Change collection and variant IDs from String to number

66b1bdf

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Fix edit button visibility by coercing GitHub user ID to string

ea48ad1

GitHub returns profile.id as a number, but the backend stores ownedBy
as a string. Strict equality between the two always returned false.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Polish collections overview and detail UI

a76ff5b

- Use contents <a> for clickable rows with proper cursor
- Row hover uses bg-base-300 (distinct from zebra bg-base-200)
- Left-align ID and variant count column headers
- Show organism label in page headline
- Replace text-base-content opacity modifiers with explicit gray colors
- Show #<id> prefix in detail view headline
- Replace Details card with inline organism/owner sentence

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          format

74a1a44

fhennig force-pushed the generalized-collections-ui branch from ce8db16 to 74a1a44 Compare

March 18, 2026 14:13

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fhennig and others added 3 commits

March 18, 2026 15:56


          Redesign collection form layout with 3-column grid and inline variant…

0af8288

… controls

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Thread DashboardsConfig through collection form and wrap with GsApp

a6eb710

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Use GsMutationFilter for mutation list variants, fix SSR by switching…

bc425f6

… to client:only

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

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fhennig and others added 3 commits

March 18, 2026 16:33


          Redesign variant editor with thirds layout and expanding description …

0724ec8

…textarea

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          Add showLabel prop to GsMutationFilter, hide label in variant editor

873f5f4

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>


          some more form improvements

63fa289

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fhennig force-pushed the generalized-collections-frontend-api branch from db7b941 to 9870dc4 Compare

March 19, 2026 15:28

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