{2025.06}[2025a] GetOrganelle 1.7.7.1

[PetrKralCZ]

8 out of 154 required modules missing:

* Bowtie2/2.5.4-GCC-14.2.0 (Bowtie2-2.5.4-GCC-14.2.0.eb)
* MPFR/4.2.2-GCCcore-14.2.0 (MPFR-4.2.2-GCCcore-14.2.0.eb)
* MPC/1.3.1-GCCcore-14.2.0 (MPC-1.3.1-GCCcore-14.2.0.eb)
* SPAdes/4.2.0-GCC-14.2.0 (SPAdes-4.2.0-GCC-14.2.0.eb)
* gmpy2/2.2.0-GCCcore-14.2.0 (gmpy2-2.2.0-GCCcore-14.2.0.eb)
* sympy/1.14.0-gfbf-2025a (sympy-1.14.0-gfbf-2025a.eb)
* Bandage/0.9.0-GCCcore-14.2.0 (Bandage-0.9.0-GCCcore-14.2.0.eb)
* GetOrganelle/1.7.7.1-foss-2025a (GetOrganelle-1.7.7.1-foss-2025a.eb)

Needs:

• {2025.06}[2025a] Qt6 v6.9.3 #1341

[bedroge]

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.12/pr_1347/115535

date	job status	comment
Dec 23 12:26:21 UTC 2025	submitted	job id 115535 awaits release by job manager
Dec 23 12:27:22 UTC 2025	released	job awaits launch by Slurm scheduler
Dec 23 12:33:25 UTC 2025	running	job 115535 is running
Dec 23 13:40:45 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-115535.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2025.06-software-linux-x86_64-amd-zen2-17664972140.tar.zst size: 49 MiB (51760665 bytes) entries: 4254 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all Bandage/0.9.0-GCCcore-14.2.0.lua Bowtie2/2.5.4-GCC-14.2.0.lua GetOrganelle/1.7.7.1-foss-2025a.lua gmpy2/2.2.0-GCCcore-14.2.0.lua MPC/1.3.1-GCCcore-14.2.0.lua MPFR/4.2.2-GCCcore-14.2.0.lua SPAdes/4.2.0-GCC-14.2.0.lua sympy/1.14.0-gfbf-2025a.lua software under 2025.06/software/linux/x86_64/amd/zen2/software Bandage/0.9.0-GCCcore-14.2.0 Bowtie2/2.5.4-GCC-14.2.0 GetOrganelle/1.7.7.1-foss-2025a gmpy2/2.2.0-GCCcore-14.2.0 MPC/1.3.1-GCCcore-14.2.0 MPFR/4.2.2-GCCcore-14.2.0 SPAdes/4.2.0-GCC-14.2.0 sympy/1.14.0-gfbf-2025a reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod Bandage/0.9.0-GCCcore-14.2.0/20251223_123624UTC Bowtie2/2.5.4-GCC-14.2.0/20251223_124636UTC GetOrganelle/1.7.7.1-foss-2025a/20251223_133758UTC gmpy2/2.2.0-GCCcore-14.2.0/20251223_130001UTC MPC/1.3.1-GCCcore-14.2.0/20251223_125927UTC MPFR/4.2.2-GCCcore-14.2.0/20251223_125528UTC SPAdes/4.2.0-GCC-14.2.0/20251223_124449UTC sympy/1.14.0-gfbf-2025a/20251223_133707UTC other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Dec 23 13:40:45 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-115535.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.12/pr_1347/14326958

date	job status	comment
Dec 23 12:26:22 UTC 2025	submitted	job id 14326958 awaits release by job manager
Dec 23 12:27:08 UTC 2025	released	job awaits launch by Slurm scheduler
Dec 23 14:52:31 UTC 2025	running	job 14326958 is running
Dec 23 15:05:56 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14326958.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ❌ no message matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2025.06-software-linux-aarch64-nvidia-grace-17665021920.tar.gz size: 17 MiB (18805139 bytes) entries: 384 modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all Bandage/0.9.0-GCCcore-14.2.0.lua SPAdes/4.2.0-GCC-14.2.0.lua software under 2025.06/software/linux/aarch64/nvidia/grace/software Bandage/0.9.0-GCCcore-14.2.0 SPAdes/4.2.0-GCC-14.2.0 reprod directories under 2025.06/software/linux/aarch64/nvidia/grace/reprod Bandage/0.9.0-GCCcore-14.2.0/20251223_145544UTC SPAdes/4.2.0-GCC-14.2.0/20251223_150040UTC other under 2025.06/software/linux/aarch64/nvidia/grace no other files in tarball
Dec 23 15:05:56 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-14326958.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[hvelab]

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[gpu-bot-ugent]

GH account hvelab is not authorized to trigger or cancel build jobs.

[eessi-bot-rug]

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.02/pr_1347/131499

date	job status	comment
Feb 16 10:48:48 UTC 2026	submitted	job id 131499 awaits release by job manager
Feb 16 10:49:49 UTC 2026	released	job awaits launch by Slurm scheduler
Feb 16 10:55:52 UTC 2026	running	job 131499 is running
Feb 16 11:51:12 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-131499.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2025.06-software-linux-x86_64-amd-zen2-17712425720.tar.zst size: 48 MiB (50440703 bytes) entries: 4154 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all Bandage/0.9.0-GCCcore-14.2.0.lua Bowtie2/2.5.4-GCC-14.2.0.lua GetOrganelle/1.7.7.1-foss-2025a.lua gmpy2/2.2.0-GCCcore-14.2.0.lua SPAdes/4.2.0-GCC-14.2.0.lua sympy/1.14.0-gfbf-2025a.lua software under 2025.06/software/linux/x86_64/amd/zen2/software Bandage/0.9.0-GCCcore-14.2.0 Bowtie2/2.5.4-GCC-14.2.0 GetOrganelle/1.7.7.1-foss-2025a gmpy2/2.2.0-GCCcore-14.2.0 SPAdes/4.2.0-GCC-14.2.0 sympy/1.14.0-gfbf-2025a reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod Bandage/0.9.0-GCCcore-14.2.0/20260216_105850UTC Bowtie2/2.5.4-GCC-14.2.0/20260216_114625UTC GetOrganelle/1.7.7.1-foss-2025a/20260216_114717UTC gmpy2/2.2.0-GCCcore-14.2.0/20260216_110743UTC SPAdes/4.2.0-GCC-14.2.0/20260216_110709UTC sympy/1.14.0-gfbf-2025a/20260216_114441UTC other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
Feb 16 11:51:12 UTC 2026	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86-64-zen2+default P: latency: 1.31 us (r:0, l:None, u:None) [ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86-64-zen2+default P: latency: 2.06 us (r:0, l:None, u:None) [ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86-64-zen2+default P: latency: 0.17 us (r:0, l:None, u:None) [ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86-64-zen2+default P: bandwidth: 7985.99 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-131499.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[gpu-bot-ugent]

GH account hvelab is not authorized to trigger or cancel build jobs.

[eessi-bot-rug]

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

[hvelab]

retrying because the error is about ReFrame config

[hvelab]

now works(ish) :D