Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- Rhapso Public
An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.
AllenNeuralDynamics/Rhapso’s past year of commit activity - data-curation-aind-analysis-wrapper Public Forked from AllenNeuralDynamics/aind-analysis-wrapper
Rachel's capsule for data-curation. This serves a wrapper for running analysis functions on input data
AllenNeuralDynamics/data-curation-aind-analysis-wrapper’s past year of commit activity - lamf-analysis Public
Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean
AllenNeuralDynamics/lamf-analysis’s past year of commit activity - aind-exaspim-data-transformation Public
A library to convert imaris (ims) files to zarr v3 in the compression step of the aind-data-transfer-service upload process from AIND network to S3 bucket.
AllenNeuralDynamics/aind-exaspim-data-transformation’s past year of commit activity - harp.device.quad-dac Public
0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
AllenNeuralDynamics/harp.device.quad-dac’s past year of commit activity - aind-dft-ephys-analysis Public
shared library for dynamic foraging task (DFT) - neuropixels analysis
AllenNeuralDynamics/aind-dft-ephys-analysis’s past year of commit activity
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