Software hooks should run immediately after installation of each package

[lreimer]

Software hooks seem to run after all outstanding packages are applied. If for some reason the installation of a package aborts (download failure or something else) the hooks are never executed and leave unpacked files with unresolved place holders.

[g3force]

Additional note that relates to this issue: All hooks are copied directly into the software folder, without a prefix for the package.
So if two packages have files with the same name, they will be overwritten and thus only one will effectively applied.