Improve package update process so it does not remove the whole root folder

[lreimer]

Sometimes you have packages that only patch specific files of an existing package. If you update these packages this will remove the dependent parent dependency files as well. This basically destroyes the installation of this package. No reproduction steps.

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Your issue doesn't follow our guidelines. Please fix the following:

• Issue description must include reproduction steps (?)
• Issue title must not end with a dot (?)

Click here for details.

Thank you! 🙏

_{This comment was made by GitMagic – Magically enforcing your contribution guidelines.}

Your issue doesn't follow our guidelines. Please fix the following:

• Issue description must include reproduction steps (?)
• Issue title must not end with a dot (?)

Click here for details.

Thank you! 🙏

_{This comment was made by GitMagic – Magically enforcing your contribution guidelines.}

This issue still violates some of our guidelines:

• Issue description must include reproduction steps (?)

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Thank you, everything looks good now!

Thank you, everything looks good now!