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ExampleStudy

Example OHDSI study package for testing Arachne.

What it does

  • Cohort: Type 2 diabetes (LEGEND-style definition in inst/cohorts/).
  • Analysis: Incidence estimation via IncidencePrevalence
  • Output: Summarised results exported to a folder; optional Shiny app to explore them.

How to run the study

  1. Get the code
    Clone the repo or download and extract the source:

    git clone git@github.com:darwin-eu-dev/ExampleStudy.git
cd ExampleStudy

    Or download the package as a ZIP and extract it.

  2. Install the package (from the ExampleStudy directory):

    devtools::install()

  3. Execute the study script
    Open extras/codeToRun.R, modify the connection information, output folder, and minCellCount. Then run the script.

Arachne

Use this package as a minimal, self-contained study when validating or testing Arachne workflows (study execution, result export, Shiny integration, etc.).