diff --git a/packages/cli/CHANGELOG.md b/packages/cli/CHANGELOG.md
index 43e120e9a..edb8e850a 100644
--- a/packages/cli/CHANGELOG.md
+++ b/packages/cli/CHANGELOG.md
@@ -1,5 +1,11 @@
 # @openfn/cli
 
+## 1.29.1
+
+### Patch Changes
+
+- Fix an issue when doing an initial pull with GH sync and an openfn.yaml file, where the endpoint in config.json should be used to intiate the sync
+
 ## 1.29.0
 
 ### Minor Changes
diff --git a/packages/cli/package.json b/packages/cli/package.json
index 21e1e3527..42ef9e625 100644
--- a/packages/cli/package.json
+++ b/packages/cli/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@openfn/cli",
-  "version": "1.29.0",
+  "version": "1.29.1",
   "description": "CLI devtools for the OpenFn toolchain",
   "engines": {
     "node": ">=18",
diff --git a/packages/cli/src/deploy/handler.ts b/packages/cli/src/deploy/handler.ts
index 4e834a0fb..a5b21d442 100644
--- a/packages/cli/src/deploy/handler.ts
+++ b/packages/cli/src/deploy/handler.ts
@@ -42,7 +42,14 @@ async function deployHandler(
       logger.always(
         'Detected openfn.yaml file - switching to v2 deploy (openfn project deploy)'
       );
-      return beta.handler({ ...options, force: true }, logger);
+      return beta.handler(
+        {
+          ...options,
+          force: true,
+          endpoint: config.endpoint,
+        },
+        logger
+      );
     }
 
     logger.debug('Deploying with config', JSON.stringify(config, null, 2));
diff --git a/packages/cli/src/pull/handler.ts b/packages/cli/src/pull/handler.ts
index 2981ce5ed..74776db93 100644
--- a/packages/cli/src/pull/handler.ts
+++ b/packages/cli/src/pull/handler.ts
@@ -31,7 +31,12 @@ async function pullHandler(options: PullOptions, logger: Logger) {
         'Detected openfn.yaml file - switching to v2 pull (openfn project pull)'
       );
       return beta(
-        { ...options, project: options.projectId, force: true },
+        {
+          ...options,
+          project: options.projectId,
+          force: true,
+          endpoint: config.endpoint,
+        },
         logger
       );
     }