diff --git a/src/per_file.bzl b/src/per_file.bzl
index 67d51538..7b187910 100644
--- a/src/per_file.bzl
+++ b/src/per_file.bzl
@@ -20,6 +20,10 @@ for each translation unit.
 load("@bazel_tools//tools/build_defs/cc:action_names.bzl", "ACTION_NAMES")
 load("@bazel_tools//tools/cpp:toolchain_utils.bzl", "find_cpp_toolchain")
 load("@codechecker_bazel//src:tools.bzl", "warning", "source_attr")
+load(
+    "@codechecker_bazel//src:codechecker_config.bzl",
+    "get_config_file"
+)
 
 def _run_code_checker(
         ctx,
@@ -27,6 +31,8 @@ def _run_code_checker(
         arguments,
         label,
         options,
+        config_file,
+        env_vars,
         compile_commands_json,
         compilation_context,
         sources_and_headers):
@@ -43,11 +49,11 @@ def _run_code_checker(
     codechecker_log = ctx.actions.declare_file(codechecker_log_file_name)
 
     if "--ctu" in options:
-        inputs = [compile_commands_json] + sources_and_headers
+        inputs = [compile_commands_json, config_file] + sources_and_headers
     else:
         # NOTE: we collect only headers, so CTU may not work!
         headers = depset([src], transitive = [compilation_context.headers])
-        inputs = depset([compile_commands_json, src], transitive = [headers])
+        inputs = depset([compile_commands_json, config_file, src], transitive = [headers])
 
     outputs = [clang_tidy_plist, clangsa_plist, codechecker_log]
 
@@ -277,7 +283,7 @@ def _collect_all_sources_and_headers(ctx):
     sources_and_headers = all_files + headers.to_list()
     return sources_and_headers
 
-def _create_wrapper_script(ctx, options, compile_commands_json):
+def _create_wrapper_script(ctx, options, compile_commands_json, config_file):
     options_str = ""
     for item in options:
         options_str += item + " "
@@ -289,6 +295,7 @@ def _create_wrapper_script(ctx, options, compile_commands_json):
             "{PythonPath}": ctx.attr._python_runtime[PyRuntimeInfo].interpreter_path,
             "{compile_commands_json}": compile_commands_json.path,
             "{codechecker_args}": options_str,
+            "{config_file}": config_file.path,
         },
     )
 
@@ -297,7 +304,8 @@ def _per_file_impl(ctx):
     sources_and_headers = _collect_all_sources_and_headers(ctx)
     options = ctx.attr.default_options + ctx.attr.options
     all_files = [compile_commands_json]
-    _create_wrapper_script(ctx, options, compile_commands_json)
+    config_file, env_vars = get_config_file(ctx)
+    _create_wrapper_script(ctx, options, compile_commands_json, config_file)
     for target in ctx.attr.targets:
         if not CcInfo in target:
             continue
@@ -314,6 +322,8 @@ def _per_file_impl(ctx):
                         args,
                         ctx.attr.name,
                         options,
+                        config_file,
+                        env_vars,
                         compile_commands_json,
                         compilation_context,
                         sources_and_headers,
@@ -363,6 +373,10 @@ per_file_test = rule(
             ],
             doc = "List of compilable targets which should be checked.",
         ),
+        "config": attr.label(
+            default = None,
+            doc = "CodeChecker configuration",
+        ),
         "_per_file_script_template": attr.label(
             default = ":per_file_script.py",
             allow_single_file = True,
@@ -370,6 +384,7 @@ per_file_test = rule(
         "_python_runtime": attr.label(
             default = "@default_python_tools//:py3_runtime",
         ),
+
     },
     outputs = {
         "test_script": "%{name}/test_script.sh",
@@ -382,12 +397,16 @@ per_file_test = rule(
 def code_checker_test(
     name,
     targets,
+    config = None,
     options = [],
     tags = [],
+    **kwargs
 ):
     per_file_test(
         name = name,
         options = options,
         targets = targets,
+        config = config,
         tags = tags,
+        **kwargs
     )
diff --git a/src/per_file_script.py b/src/per_file_script.py
index 46bd13b4..47bdafb4 100644
--- a/src/per_file_script.py
+++ b/src/per_file_script.py
@@ -32,6 +32,7 @@
 COMPILE_COMMANDS_JSON: str = "{compile_commands_json}"
 COMPILE_COMMANDS_ABSOLUTE: str = f"{COMPILE_COMMANDS_JSON}.abs"
 CODECHECKER_ARGS: str = "{codechecker_args}"
+CONFIG_FILE: str = "{config_file}"
 
 
 def parse_args():
@@ -82,10 +83,15 @@ def _run_codechecker() -> None:
     """
     Runs CodeChecker analyze
     """
-    log(
-        f"CodeChecker command: CodeChecker analyze {CODECHECKER_ARGS} \
-{COMPILE_COMMANDS_ABSOLUTE} --output={DATA_DIR} --file=*/{FILE_PATH}\n"
+    codechecker_cmd: list[str] = (
+        ["CodeChecker", "analyze"]
+        + CODECHECKER_ARGS.split()
+        + ["--output=" + DATA_DIR]  # type: ignore
+        + ["--file=*/" + FILE_PATH]  # type: ignore
+        + ["--config", CONFIG_FILE]
+        + [COMPILE_COMMANDS_ABSOLUTE]
     )
+    log(f"CodeChecker command: {' '.join(codechecker_cmd)}\n")
     log("===-----------------------------------------------------===\n")
     log("                   CodeChecker error log                   \n")
     log("===-----------------------------------------------------===\n")
@@ -99,13 +105,6 @@ def _run_codechecker() -> None:
     )
     log(result.stdout)
 
-    codechecker_cmd: list[str] = (
-        ["CodeChecker", "analyze"]
-        + CODECHECKER_ARGS.split()
-        + ["--output=" + DATA_DIR]  # type: ignore
-        + ["--file=*/" + FILE_PATH]  # type: ignore
-        + [COMPILE_COMMANDS_ABSOLUTE]
-    )
 
     try:
         with open(LOG_FILE, "a") as log_file:  # type: ignore
diff --git a/test/unit/config/BUILD b/test/unit/config/BUILD
index 2447abda..b2b8493e 100644
--- a/test/unit/config/BUILD
+++ b/test/unit/config/BUILD
@@ -90,8 +90,7 @@ codechecker_test(
 
 codechecker_test(
     name = "per_file_test_json",
-    #config = "config_json", #TODO: uncomment
-    # complains that per_file doesn't have a config attribute
+    config = "config_json",
     targets = [
         "test_zero",
     ],
@@ -101,8 +100,7 @@ codechecker_test(
 
 codechecker_test(
     name = "per_file_test_yaml",
-    #config = "config_yaml", #TODO: uncomment
-    # complains that per_file doesn't have a config attribute
+    config = "config_yaml",
     targets = [
         "test_zero",
     ],
diff --git a/test/unit/config/test_config.py b/test/unit/config/test_config.py
index 145bcf59..72acd4a5 100644
--- a/test/unit/config/test_config.py
+++ b/test/unit/config/test_config.py
@@ -95,15 +95,13 @@ def test_per_file_test_json(self):
             "bazel test //test/unit/config:per_file_test_json"
         )
         # Should not find the division by zero bug
-        self.assertEqual(ret, 3) # TODO: Change to 0
-        # since CodeChecker won't find the division by zero bug
+        self.assertEqual(ret, 0)
         copied_config = os.path.join(
             self.BAZEL_BIN_DIR, # type: ignore
             "per_file_test_json",
             "config.json"
         )
-        self.assertFalse(os.path.exists(copied_config)) # TODO: Set to True
-        # Before the patch config files aren't supported in per_file
+        self.assertTrue(os.path.exists(copied_config))
 
     def test_per_file_test_yaml(self):
         """Test: bazel test //test/unit/config:per_file_test_yaml"""
@@ -111,15 +109,13 @@ def test_per_file_test_yaml(self):
             "bazel test //test/unit/config:per_file_test_yaml"
         )
         # Should not find the division by zero bug
-        self.assertEqual(ret, 3) # TODO: Change to 0
-        # since CodeChecker won't find the division by zero bug
+        self.assertEqual(ret, 0)
         copied_config = os.path.join(
             self.BAZEL_BIN_DIR, # type: ignore
             "per_file_test_yaml",
             "config.yaml"
         )
-        self.assertFalse(os.path.exists(copied_config)) # TODO: Set to True
-        # Before the patch config files aren't supported in per_file
+        self.assertTrue(os.path.exists(copied_config))
 
 
 if __name__ == "__main__":